Skip to main content
QuidsBookkeeping
A man reading through a handful of paperwork under a lamp

How CIS deductions work

When you pay a subcontractor under CIS, you take tax off the labour on their invoice and pay it to HMRC. Here are the rates, the order things come off in, and a worked example.

Published 15 September 2026

The short answer

A contractor takes CIS tax off the labour part of a subcontractor’s invoice and pays it to HMRC. The rate is 20% if HMRC can match the subcontractor, 30% if it cannot, and nothing if they hold gross payment status. VAT and the materials they paid for come off first, so CIS is never charged on them.

How much tax is deducted under CIS?

Twenty percent of the labour for most subcontractors, thirty percent for those HMRC cannot match, and nothing for those with gross payment status. You find out which applies when you verify the subcontractor with HMRC.

The three CIS rates, in force since 6 April 2007. Source: HMRC manual CISR71020.

The subcontractor's statusRateWhat it means
Registered with HMRC, and verification matched them20%The common case.
Not registered, or verification could not match them30%Applies when HMRC has no record of their registration or cannot match the details you give. Being registered is not enough on its own: if the details do not match, the rate is still 30%.
Holds gross payment status0%Nothing is deducted. HMRC grants this, and a contractor cannot.

The deduction is one of six jobs a contractor does each month. Our guide to how CIS works covers all six.

Is CIS tax always 20%?

No. It is twenty percent only when the subcontractor is registered for CIS and your verification check matches them. Otherwise it is thirty percent, even if they tell you they are registered.

That is the usual reason a subcontractor sees 30% taken off. GOV.UK warns them: If they cannot verify you, it can affect how much you’re paid. If either do not apply, contractors will take deductions at a higher rate.

If you deduct twenty percent without verifying and HMRC’s record says otherwise, the ten percent difference is yours to make up. So verify every subcontractor before the first payment. How to verify a subcontractor

How do CIS deductions work?

You take VAT and what the subcontractor paid for off the invoice, then apply their rate to what is left. Step by step:

  1. Start with the invoice total, without VAT. Where the domestic reverse charge applies there is no VAT on the invoice anyway.
  2. Take off what the subcontractor paid for. Materials they bought themselves, plus hired plant, consumables, fuel used on the job (not for travel) and prefabrication. Travel and subsistence stay in.
  3. Apply their rate to what is left. That remainder is the labour, and it is the only part CIS applies to.
  4. Pay them the invoice total less the deduction. The deduction is yours to pay to HMRC, not to keep.
  5. Give them a statement. A payment and deduction statement showing what you paid and what you took off.

GOV.UK tells contractors to start with the total (gross) amount of the subcontractor’s invoice, take off what the subcontractor paid for, then apply the rate: You’ll be left with the net amount you need to pay the subcontractor. And you must give the subcontractor a payment and deduction statement within 14 days of the end of each tax month.

The full list of costs that come off, and the ones people wrongly take off, is in our guide to what counts as materials under CIS.

How much is a CIS deduction? A worked example

On a £1,600 invoice with £400 of materials, a verified subcontractor has £240 deducted and is paid £1,360.

The subcontractor is a groundworker, registered for VAT and verified at 20%. Their CIS invoice is £1,200 of labour and £400 of materials they bought themselves, and the domestic reverse charge applies, so there is no VAT on it.

One subcontractor invoice, worked through.

StepAmount
Invoice total, excluding VAT£1,600
Less materials they paid for−£400
Labour, the part CIS applies to£1,200
Deduction at 20% of the labour£240
You pay the subcontractor£1,360
You pay HMRC£240

The deduction is worked out on the labour but comes off the whole invoice. That is why the subcontractor is paid £1,360: the £1,600 total less the £240.

Work out your own invoice

Put in your own figures. The calculator handles the materials, both rates and the reverse charge, and tells you when it cannot be sure. It also has its own page.

Calculation type

The total for the job. Leave VAT out of this box.

Holding money back? Retention, a contra or a set-off

Retention. Put in only the part you are paying now, not the amount you are holding back. Retention is not deducted until you pay it. When you release it, work it out again at whatever their status is on that day.

A contra, where you supplied materials and charge them back, does not reduce what tax is worked out on. Put the full invoice in, before your charge.

A set-off, where you are holding money back because the work was not right, does reduce it. Put in the reduced figure.

Source: HMRC CISR15030, CISR15040 and CISR15110.

What they paid for materials, not their time. If there were none, put 0. If they are not VAT registered, include the VAT they paid on the materials.

What did HMRC tell you when you verified them?
Not sure which one?

HMRC tells you the rate when you verify the subcontractor, and you have to verify a new subcontractor before you pay them. It is 30% if HMRC has no record of their registration or cannot match the details you give. Do not go from memory either: since 6 April 2026 HMRC can cancel gross payment status immediately, so a status that was right last month may not be right today.

Example

A £2,400.00 invoice with £400.00 of materials, from a verified subcontractor.

£2,000.00 of that is labour. At 20% the deduction is £400.00, so you pay them £2,000.00 and send HMRC £400.00.

Fill in the boxes and your figures appear here.

Is CIS tax the same as VAT?

No. CIS is tax taken off the subcontractor’s labour; VAT is charged on the work. VAT comes off before the CIS rate is applied, so the deduction is the same whatever happens to the VAT.

In the example, the reverse charge means the subcontractor charges you no VAT. You put the £320 on your own VAT return as VAT due and normally reclaim the same amount, so no money changes hands. If the reverse charge does not apply to the job, they add the £320 to the invoice and you pay it on top: £1,680 in all, with the deduction still £240. When the reverse charge applies

What if the subcontractor has no receipts for materials?

You estimate the cost yourself. GOV.UK says:

“You can ask the subcontractor for evidence (for example, receipts) that they paid for materials directly. If they do not have any evidence, estimate the cost of the materials.”

GOV.UK, make deductions and pay subcontractors

A lower estimate means a bigger deduction. On the same invoice, if you estimate the materials at £250 instead of £400, the labour becomes £1,350, the deduction £270, and the subcontractor is paid £1,330, which is £30 less. Asking for receipts before you pay avoids the argument.

We work out every subcontractor's deduction from their invoice and receipts, so the statement and the return agree.

Get in touch

How do I pay CIS deductions to HMRC?

You list them on your monthly CIS return and pay them over each month. The return is due by the 19th of the month after each tax month ends, and the money by the 22nd if you pay electronically.

CIS monthly returns, deadlines and penalties

How do I stop CIS deductions?

Only with gross payment status from HMRC. The subcontractor applies, and HMRC checks the business, its turnover and its tax record. Until verification shows it, you deduct at their verified rate.

A contractor cannot agree to pay someone gross. If you do it because they said they had the status, the deduction you did not take is yours to pay. How gross payment status works

Do subcontractors get CIS deductions back?

They count towards the subcontractor’s tax, so anything taken over what they owe can be claimed back. GOV.UK says they count as advance payments towards the subcontractor’s tax and National Insurance bill.

Sole traders and limited companies claim in different ways. How to claim a CIS refund

Get every deduction right, every month

We work out each subcontractor’s deduction, get their statements ready and prepare your CIS return, ready for you to check and submit before the 19th. Join the waitlist for 2027.